Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2098030 chr14:74421321 C/T 4.89E-7 176 25.28 28.38 7.4 KM Plot
PCPG rs2106538 chr22:21298315 C/T 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs2109427 chr12:6592082 A/C 0.000283 176 16.3 26.27 25.42 KM Plot
PCPG rs2109752 chr14:74629668 T/G 2.29E-5 175 25.4 26.92 10.43 KM Plot
PCPG rs2128871 chr15:30946169 C/T 0 177 25.87 23.43 3.17 KM Plot
PCPG rs2128872 chr15:30946160 C/T 1.11E-16 174 25.6 24.23 3.17 KM Plot
PCPG rs2128968 chr13:64106046 A/C 3.05E-5 177 22.63 21.55 26.57 KM Plot
PCPG rs2137230 chr2:107233134 G/C 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs2138112 chr3:80576523 T/C 6.94E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs2145319 chr6:26496762 G/C 6.66E-7 177 10.68 35.32 24.5 KM Plot
PCPG rs2147169 chr13:37585665 C/T 0.000272 178 4.17 25 25.47 KM Plot
PCPG rs2157466 chr22:27382132 C/G 0.000209 175 25.4 24.98 24.3 KM Plot
PCPG rs2166720 chr2:61577435 T/C 0.000452 178 24.1 30.93 17.85 KM Plot
PCPG rs2170420 chr8:72072077 C/T 5.64E-6 178 10.3 22.63 25.92 KM Plot
PCPG rs2170761 chr15:30946306 C/G 0 178 25.77 23.43 3.17 KM Plot